Giters
Maxime Borry (maxibor)

maxibor

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following

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Company:Max Planck institute for Evolutionary Anthropology

Location:Leipzig, Germany

Home Page:https://maximeborry.com

Twitter:@notmaxib

Github PK Tool:Github PK Tool

Organizations
nf-core
poseidon-framework
rrdm-shh

Maxime Borry's starred repositories

mummer2circos

Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

Language:PythonLicense:MITStargazers:95Issues:0Issues:0

vcf2circos

python plotly Circos from VCF

Language:PythonLicense:AGPL-3.0Stargazers:30Issues:0Issues:0

uv-k5-firmware-custom

This is a fork of Egzumer https://github.com/egzumer/uv-k5-firmware-custom

Language:CLicense:Apache-2.0Stargazers:309Issues:0Issues:0

uv-k5-firmware-custom

Open re-implementation of the Quansheng UV-K5 firmware

Language:CLicense:Apache-2.0Stargazers:239Issues:0Issues:0

uv-k5-firmware-custom

A merge between https://github.com/OneOfEleven/uv-k5-firmware-custom and https://github.com/fagci/uv-k5-firmware-fagci-mod

Language:CLicense:Apache-2.0Stargazers:1177Issues:0Issues:0

apparix

Command line directory bookmarks with jumping to bookmarks, subdirectory tab completion, distant listing etc

Language:ShellLicense:GPL-3.0Stargazers:35Issues:0Issues:0

strainberry

Automated strain separation of low-complexity metagenomes

Language:PythonLicense:MITStargazers:47Issues:0Issues:0

taipy

Turns Data and AI algorithms into production-ready web applications in no time.

Language:PythonLicense:Apache-2.0Stargazers:10821Issues:0Issues:0

parsnp

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

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groves

Tools for analyzing trees

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skygrowth

Phylodynamic inference

Language:RLicense:MITStargazers:18Issues:0Issues:0

wesanderson

Wes Anderson color palettes for python!

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coder

Provision remote development environments via Terraform

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plot_phylo

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sqlglot

Python SQL Parser and Transpiler

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stat_rethinking_2024

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hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

Language:AssemblyLicense:Apache-2.0Stargazers:554Issues:0Issues:0

gatsby-starter-conference

Gatsby starter for conference website

Language:JavaScriptLicense:MITStargazers:8Issues:0Issues:0

bambi

BAyesian Model-Building Interface (Bambi) in Python.

Language:PythonLicense:MITStargazers:1053Issues:0Issues:0

PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Language:PythonLicense:MITStargazers:563Issues:0Issues:0

spearmint

Refreshing experiment analysis in python

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CoCo

Consensus Correction

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gatsby-theme-agora

A Gatsby theme for creating conference landing pages

Language:TypeScriptLicense:MITStargazers:1Issues:0Issues:0

Scoary

Pan-genome wide association studies

Language:PythonLicense:GPL-3.0Stargazers:147Issues:0Issues:0

cowpatch

pythonic ggplot image combinations https://benjaminleroy.github.io/cowpatch

Language:Jupyter NotebookLicense:MITStargazers:10Issues:0Issues:0

nextflow-gotchas

A collection of unexpected challenges and learnings with nextflow and nf-core.

Language:ShellLicense:CC-BY-SA-4.0Stargazers:34Issues:0Issues:0

TreeViewer

Cross-platform software to draw phylogenetic trees

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FUNAGEPro

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pgr-tk

PGR-TK: Pangenome Research Tool Kit

Language:RustLicense:MITStargazers:89Issues:0Issues:0

pysamstats

A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

Language:PythonStargazers:189Issues:0Issues:0