max-brambach

nuQLOUD

Analysis framework for the generation of organisational features from point clouds.

F-TGMM

Forked Tracking with Gaussian Mixture Models (F-TGMM) for use with linux CUDA-compatible systems.

microglia_centrosome

Repository containing the code used for parts of the analysis of the paper "A role for the centrosome in regulating the rate of neuronal efferocytosis by microglia in vivo" by K. Möller et al.

MVRegFus

Python module for registering and fusing multi-view microscopy data

neural_tube_patterning_paper

Repository containing the code used in the paper "Neural tube patterning: from a minimal model for rostrocaudal patterning towards an integrated 3D model" by M. Brambach et al. (https://doi.org/10.1016/j.isci.2021.102559).

tgmm_utility

vedo

A python module for scientific analysis of 3D objects based on VTK

cellpose

a generalist algorithm for cellular segmentation

max-brambach.github.io

oyFlow

Flow cytometry analysis, eventually

python-pcl

Python bindings to the pointcloud library (pcl)

seaborn-data

Data repository for seaborn examples

voro

Voro++: a three-dimensional Voronoi cell library in C++