maweigert

gputools

GPU accelerated image/volume processing in Python

neubias_academy_stardist

spotipy

napari-particles

betterplots

Some utilities to create better plots with seaborn

stardist-i2k

tutorials

napari-nlm

thesis_page

dl-teaching-resources

Collection of teaching material for deep learning for (biomedical) image analysis

napari

napari: a fast, interactive, multi-dimensional image viewer for python

teaching-dl-course-2020

EMBL Deep Learning course 2020-21 exercises and materials

01_intro_mldl

Intro exercise for ML and DL...

backbones

Common neural network architectures implemented in PyTorch

cdtriang

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

EDT

Euclidean Distance Transform

embo_2022

CARE/Stardist tutorials for EMBO Practical Course — Computational optical biology 2022

fireflyfestival

imagej.github.io

GitHub Pages for ImageJ

magicgui

build GUIs from python functions, using magic.

napari-example-plugin-foofoo

napari-foobar

napari-points-io

normalize_fast

pyopencl

OpenCL integration for Python, plus shiny features

stardist

StarDist - Object Detection with Star-convex Shapes

traccuracy

Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth

training-resources

Resources for teaching/preparing to teach bioimage analysis

zidas_2020_DL_intro_Part_2