mauriziopaul

flu-diallel

Influenza Diallel Analysis

mauriziopaul.github.io

My GitHub Pages homepage

PLMcctools

PLMcctools: A package containing some simple tools for handling Collaborative Cross data sets, and other miscellanea.

blog

Simple Blog

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

demuxlet

Genetic multiplexing of barcoded single cell RNA-seq

DIDACT-1

Diallel-Informed Decision theoretic Approach for Crosses Tool

dmatch

esATAC

Bioconductor package: An Easy-to-use Systematic pipeline for ATACseq data analysis

example-models

Example models for Stan

flu-histo

intro-to-R

Website for teaching R at the How to Learn to Code summer miniseries at UNC-Chapel Hill

litterDiallel

litterDiallel: an R package for reproducing analysis from the litter diallel manuscript.

malariaInfantStudy

The Malaria Infant Study

mauriziopaul

Config files for my GitHub profile.

mecom_var_mod

monocle3

muscat

Multi-sample multi-group scRNA-seq analysis tools

seurat

R toolkit for single cell genomics

SingleR

SingleR: Single-cell RNA-seq cell types Recognition

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

status_genome_2016

data and code for "Social status alters immune regulation and response to infection"

treatmentResponseDiallel

Package For the Analysis of Treatment-Response Phenotypes in the Influenza Diallel Paper

zeppelin

Awesome conference website in 5 minutes.

scAVENGERS

SCOPfunctions_mod

An R package of functions for single cell -omics analysis.

seurat-object

susiepca

Scalable Ultra-Sparse Bayesian PCA

TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.