Matthew Ocanas's repositories
Antibody-Antigen-Interaction-Pred-CNN
CNN for Prediction of Antibody Antigen Binding
CDR-Classification
This notebook uses HuggingFace, GPT2, and ESM to build a transformer model that can predict CDR loops in antibody heavy chain sequences.
ESM-Sequence-Generator
Use ESM to fill in a specified range or residues in a protein sequence of interest. Used in this case for CDR library generation of monoclonal antibodies.
Makemore
NN-Zero-to-Hero Bigram and basic neural net implementation of make more
MusicAppUI
A UI for a social music app
Novozyme-Stability-Prediction
Notebook for the Novozyme enzyme thermostability kaggle contest
Protein-GPT2-Infilling
This notebook uses GPT2 to learn spans of residues given a surrounding protein context. It can then generate a library of protein sequences for a specified residue span.
socialcalUI
A UI Design for a RN Social Calendar App
Spotify-UI-Clone
A UI clone of spotify
XGBoost-Enzyme-Stability-Pred
Novozyme stability Kaggle competition using XGBoost
zero-to-mastery-ml
All course materials for the Zero to Mastery Machine Learning and Data Science course.