Matt Todd's repositories
shap
A game theoretic approach to explain the output of any machine learning model.
pytometry
Flow & mass cytometry analytics.
headscale
An open source, self-hosted implementation of the Tailscale control server
python-causality-handbook
Causal Inference for the Brave and True. A light-hearted yet rigorous approach to learning about impact estimation and causality.
k3s
Lightweight Kubernetes. 5 less than k8s.
flowCore
Core flow cytometry infrastructure
openCyto
A package that provides data analysis pipeline for flow cytometry.
flowStats
flowStats: algorithms for flow cytometry data analysis using BioConductor tools
flowWorkspace
flowWorkspace
ggcyto
Visualize Cytometry data with ggplot2
ncdfFlow
A package that provides ncdf based storage for flow cytometry data.
cytolib
c++ library for representing and interacting the gated cytometry data structure
cytoUtils
Helper tools for cytometry
FlowIO
A Python library for reading and writing Flow Cytometry Standard (FCS) files
FlowUtils
FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
terraform-aws-gitlab-runner
Terraform module for AWS GitLab runners on ec2 (spot) instances
CytoPy
A data-centric flow/mass cytometry automated analysis framework
awesome-explainable-graph-reasoning
A collection of research papers and software related to explainability in graph machine learning.
deepmind-research
This repository contains implementations and illustrative code to accompany DeepMind publications
deepimagej-plugin
The ImageJ plugin to run deep-learning models
FDApy
Python Package for Functional Data Analysis
osx-config
Configuration files / scripts which are used to configure OS X
pihole-local
A super simple PiHole setup for local DNS-over TLS and Unbound
enterprise_gateway
A lightweight, multi-tenant, scalable and secure gateway that enables Jupyter Notebooks to share resources across distributed clusters such as Apache Spark, Kubernetes and others.
docker-ipfs-key
Dockerized ipfs-key process image