Giters
Matt Huska (matthuska)

matthuska

Geek Repo

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Location:Berlin

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Matt Huska's repositories

conda-move

Move environments from an existing conda installation to another directory

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tRap

R package implementing the TRAP method to predict transcription factor binding affinity to DNA sequences

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transit

Science Hack Day Berlin 2015: Physical Transit Visualization

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cmbr2

CMB R Scripts

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biasviz

BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments.

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bioconda-recipes

Conda recipes for the bioconda channel.

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dataserver

Zotero Data Server

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dot-nvim

My ~/.config/nvim directory

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dot-vim

My .vim directory

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high_res

High Res was a nice theme for Tumblr.

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jenkins-test

A tiny test repo for testing out Jenkins

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motifcounter

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MTBseq_source

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

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nvim-minimal-tree-sitter

A minimal neovim config for installing a custom tree-sitter parser

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nvim-nvchad

My neovim setup using NvChad

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obsidian-templates

My Obsidian templates. Hopefully up to date, probably not.

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predict-nmi

Predict non-methylated genomic regions by training a spectrum kernel SVM on known non-methylated regions

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pubmed2html

Command line tool to do a PubMed query and return the results as nicely formatted HTML

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r-optparse

R package providing a commandline optional argument parser

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smfc-x9sci

Super Micro Fan Control (fork to work with X9SCI)

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snakesrt

Sort rule parameters in Snakemake files

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tout

A script to measure and limit CPU time and memory consumption of black-box processes in Linux

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tree-sitter-nextflow

Tree sitter parser for nextflow

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tree-sitter-nextflow-config

Nextflow config file grammar for tree-sitter

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tree-sitter-snakemake

Snakemake grammar for tree-sitter

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tumblr-photoblog

Tumblr Photoblog Tools

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Zoo-For-Zotero

This is an Android app for viewing Zotero libraries.

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zotero

Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share your research sources.

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ztpi

STATE Festival Berlin 2014: Time Bureau

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