Matteo Tolloso's repositories
BioCograph
A tool capable of parsing datasets of papers from pubmed, annotating entities that appear using bio-BERT, creating a network of cooccurrences on which to perform analysis with various algorithms
alphafold
Open source code for AlphaFold to extract protein embeddings
Language:Jupyter NotebookApache-2.0000
Language:Jupyter NotebookNOASSERTION000
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Language:PythonMIT000
Exams
Collection of oral questions and exam material
000
file_storage_server
A high concurrent client/server architecture for storing files in main memory managed as a cache
network_stats
A simple client/server ping-pong application working on UDP that measures some basic network statistics
prose
Multi-task and masked language model-based protein sequence embedding models.
Language:PythonNOASSERTION000