mattcieslak

easy_lausanne

Easy creation of Lausanne2008 atlases

MITTENS

A Python library for Analytic Tractography

AMICO

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data

ANTs

Advanced Normalization Tools (ANTs)

ANTsPyNet

Medical image analysis framework merging ANTsPy and deep learning

aslprep

bids-specification

Brain Imaging Data Structure (BIDS) Specification

book

Sources for the DataLad handbook

datalad

Keep code, data, containers under control with git and git-annex

datalad-paper-joss

Repository for JOSS paper on DataLad

dipy

Diffusion MR Imaging in Python

dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

DRIP

Data Release Integrity Pipeline

DSI-Studio

Diffusion MRI analysis tool

exchange

Flywheel Exchange

fmriprep

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

fmriprep-1

fMRIprep is a functional magnetic resonance image pre-processing pipeline developed by the Poldrack Lab at Stanford University

neuromaps

A toolbox for comparing brain maps

nibabel

Python package to access a cacophony of neuro-imaging file formats

nilearn

Machine learning for NeuroImaging in Python

ohbm_shoreline

presurgical-report

Repository for presurgical report gear

QSIPREP_HBCD_QC

Tool to make QC images for HBCD's QSIPREP Output

SCOT

sdcflows

Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes

smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcesssing tools)

test-RBC-analysis0

thalamocortical_development

https://pennlinc.github.io/thalamocortical_development/

TORTOISEV4

Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation

ZAPR01_dMRI_TMSfMRI