Matt Cieslak's repositories
easy_lausanne
Easy creation of Lausanne2008 atlases
ANTsPyNet
Medical image analysis framework merging ANTsPy and deep learning
bids-specification
Brain Imaging Data Structure (BIDS) Specification
datalad
Keep code, data, containers under control with git and git-annex
datalad-paper-joss
Repository for JOSS paper on DataLad
dipy
Diffusion MR Imaging in Python
DRIP
Data Release Integrity Pipeline
DSI-Studio
Diffusion MRI analysis tool
exchange
Flywheel Exchange
fmriprep
fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.
fmriprep-1
fMRIprep is a functional magnetic resonance image pre-processing pipeline developed by the Poldrack Lab at Stanford University
neuromaps
A toolbox for comparing brain maps
nibabel
Python package to access a cacophony of neuro-imaging file formats
presurgical-report
Repository for presurgical report gear
QSIPREP_HBCD_QC
Tool to make QC images for HBCD's QSIPREP Output
sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
thalamocortical_development
https://pennlinc.github.io/thalamocortical_development/
TORTOISEV4
Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation