mationai / bioinfo

Cogniterra/Stepik Bioinformatics/Genomics with Python

Solutions (spoilers!) for same course in 3 platforms:

• Cogniterra (was Stepik) Genome Sequencing
• Coursera Bioinformatics

Functional Packages and Usage

Functional Programming and String Algorithms is like Peanut Butter meets Bread, so many are used here.

pipe lib usage

from pipe import permutations

for n in 'AC' | permutations(2):
   print(n)

Setup / Python version

Use python 3.12

Running

python src/cogniterra/1-1.py     # run all exercises in 1-1.seq
python src/cogniterra/1-1.py 1   # run exercise 1 in 1-1.seq
python src/cogniterra/1-1.py 2:4 # run exercise 2-4 in 1-1.seq