Mathieu Bolteau's repositories
scRNA2BoNI
scRNA2BoNI - A general framwork to infer Boolean networks from scRNAseq data.
Bolteau_PhD_Thesis_Supplement
Supplement of the Mathieu Bolteau's PhD Thesis Manuscript
caspo
Reasoning on the response of logical signaling networks with Answer Set Programming
ContaVect
Complete suite to analyse DNA contaminants of virus/vector preparation from NGS data
GLOG-Project
Repository for the software engineering project during the second year of the Master of Bioinformatics at the University of Bordeaux.
iggy
:arrow_upper_right: Influence graph analysis, consistency check, diagnosis, repair and prediction
LesMinimesEnUnClic_Application
OOP project of the second semester of the M1 Bioinformatics Master at University of Bordeaux
M1_PDP_Project
Web application of metabolics pathway visualisation, for the Gencovery business (https://gencovery.com/), created during the PDP project during the M1 of the Master of Bioinformatics, in Bordeaux.
MeneTools
MeneTools are Python3 tools to explore the topology of metabolic networks. It includes Menecheck, Menescope, Menepath and Menecof.
SSV-Coverage
Coverage graph creator from BAM files (included in the SSV-Conta package)
notebooks
This repository collects notebooks for the course
Overfitting_in_ML
Notebook to present overfitting using diabetes dataset.
personal-website
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Projet_IA
Identification d’ensembles de gènes par programmation logique
Quade
Demultiplexer for PAIRED fastq files based on index sequence and PHRED quality (pure python)
SeedTaag
SeedTaag is a package for visualizing and performing topological measurements on metabolic networks
Sekator
Multithreaded quality and adapter trimmer for PAIRED fastq files (Python2.7/Cython/C)