Ramon Massoni-Badosa's repositories
tabula_muris_networks
R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)
code_snippets
A collection of code snippets for different tasks
HCATonsilData
Provide programmatic access to the tonsil cell atlas datasets
sampling_artifacts
Scripts and analysis notebook to reproduce all the scRNA-seq analysis in "Sampling time-dependent artifacts in single-cell genomics studies", published by Massoni-Badosa et al. in Genome Biology (2020)
richter_transformation
Scripts scRNA-seq analysis Richter project
cellranger
Scripts to create cellranger calls for multiple libraries of a subproject
cellranger_hashing
Scripts to create cellranger calls in scRNA-seq experiments that include cell hashing
cluster_scripts
Scripts to run computer-intensive operations in the cluster
TonsilAtlas
Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)
bulk_genomics_2024
This repository contains a 2024 version of how to run end-end buk genomics / transcriptomics / epigenomics analysis
cv-1
My Curriculum Vitae
rosalind_problems
My solutions to the bioinformatics problems in rosalind.info
SBI-project-1
SBI-Python project , Constructing macromolecular complexes.
symphony
Efficient and precise single-cell reference atlas mapping with Symphony
TabulaMurisSenisData
data from the TabulaMuris Senis project
Tbet_in_CLL
TBET expression and activity in tonsillar cells; in the context of a larger project looking at TBET expression in chronic lymphocytic leukemia (CLL)