Matthias Hörtenhuber's repositories
actions-runners
Instructions and scripts for custom GitHub Actions runners
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
astro
The web framework that scales with you — Build fast content sites, powerful web applications, dynamic server APIs, and everything in-between ⭐️ Star to support our work!
astro-remark-description
Automatically add a description to the frontmatter of your markdown in Astro
configs
Config files used to define parameters specific to compute environments at different Institutions
crisprseq
A pipeline for the analysis of CRISPR edited next generation sequencing (NGS) data. CRISPR gene knockouts (KO), CRISPR knock-ins (KI), base editing (BE) and prime editing (PE) experiments
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
MultiQC_website
Website files for MultiQC. See https://github.com/ewels/MultiQC
nf-co2footprint
[WIP] A Nextflow plugin to estimate the CO2 footprint of pipeline runs.
nf-test
Simple test framework for Nextflow pipelines
plessy_pairwiseGenomeComparison
Draft workflow for pairwise genome comparison
prompt-battle
Battle each other in an amazing prompt battle using the power of DALL-E.
remark-smartypants
remark plugin to implement SmartyPants
ro-crate-py
Python library for RO-Crate
setup-nf-test
Github Action to use nf-test in CI
shiki
A beautiful Syntax Highlighter.
sphinx-nf_core-markdown-builder
A Sphinx extension to add nf-core flavored markdown generation support.
taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
terraform-aws-github-runner
Terraform module for scalable GitHub action runners on AWS
vale
Spelling and grammar linting for nf-core documentation
website
Nextflow public web site