marypiper

WIB_scRNA-seq

Cluster without the fluster: what to expect in a single-cell RNA-seq workflow

bcbio_rnaseq_workflow

bcbio_single_cell_workflow

2019_scWorkshop

Repo for Physalia course Analysis of Single Cell RNA-Seq data

cellphonedb

datafest-2021

R_functions

useful R functions for analyses

Accessing_public_genomic_data

Tutorials on accessing public reference and genomic data

carpentries_talk

cloud-genomics

Lesson on Cloud/HPC for genomics lessons

data_camp

DGE_workshop_salmon_online

git-novice

Software Carpentry introduction to Git for novices.

In-depth-NGS-Data-Analysis-Course

Intro-to-ChIPseq-flipped

Intro-to-R-flipped

Intro-to-R_IDC2017

Materials for a 2-day introduction to the R programming language

Intro-to-rnaseq-hpc-salmon-flipped

Introduction to bulk RNA-seq

Intro-to-shell-flipped

introduction-genomics

main

methods

mpiper_scripts

code for hsph analyses

online-python-training

Repo for materials associated with the Online Python Training (OPT) project

publication_perfect

Six hour hands-on to creating publication-quality plots in R

Rmarkdown_analysis_reports

scRNA-seq_online

Training-modules

Materials for short, half-day workshops

tutorials

This repo contains tutorials for different NGS analysis methods

umis

Tools for processing UMI RNA-tag data