##ORF finder
This program takes a fasta nucleotide file and outputs the list of possible ORF's with info in gff3 format. It includes: GC content in all frames, Shine-Dalgarno sequence presence, and codon bias.
Currently it doesn't take into account ambiguity bases.
The output from this program could be used to predict genes from procariotic genomes.
Usage: python3 blastParser.py [options] -i FILE Options: -h : print this help -v : verbose mode -i [FILE] : path to input file (in fasta) -o [FILE] : name of the output file (gff format) -m [INT] : Shortest ORF threshold (default = 200) -n [INT] : Longest ORF threshold (default = 3000) -s : Don't filter ORFs with Shine-Dalgarno probability of 0