Marta Vidal-Garcia's repositories
ShapeRotator
an R tool for standardised rigid rotations of articulated Three-Dimensional structures with application for geometric morphometrics
morpho.tools.GM
A set of functions to help with geometric morphometric analyses of 3D data
mesh_process
An R tool for batch-processing of meshes and landmark files for shape analyses
3D_GM_misc
Miscellaneous scripts to deal with 3D landmark data and rendered volumes
jumping-toads
This repository contains the R code for the paper: Hudson CM, Vidal-García M, Murray TG, Shine R. 2020 The accelerating anuran: evolution of locomotor performance in cane toads ( Rhinella marina, Bufonidae) at an invasion front. Proc. R. Soc. B 20201964. http://dx.doi.org/10.1098/rspb.2020.1964
mantis-evol
This repository contains the R code, data, and figures for the paper Vidal-García, M., O'Hanlon, J.C., Svenson, G.J, Umbers, K.D.L. (in press) The evolution of defensive displays in praying mantises. Proceedings of the Royal Society B
Oculudentavis_retrodeformation
Retrodeformation code for the paper Bolet, A., Stanley, E., Daza, J.D., Arias, J.S., Čerňanský, A., Vidal-García, M., Bauer, A.M., Bevitt, J.J., Peretti, A., Evans, S.E., (2021) Unusual morphology in the mid-Cretaceous lizard Oculudentavis. Current Biology. https://bit.ly/3eaZcVL
2019OrganizationalDocs
notes and documents for 2019 Workshop
2019Workshop
Files related to 2019 workshop
BHlab_exercise1
A short exercise to clone this repo and modify the file locally
DeepLearningBasedSegmentationForBiologists
3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehensive image analysis pipeline for immune profiling of 2D multiplexed images
drishti
Drishti
ggnetworx
phylogenetic networks using ggplot2 and ggtree
ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
Landmarking
Repository for registration-based landmarking and shape optimization.
phangorn
Phylogenetic analysis in R
practical-machine-learning-with-python
Master the essential skills needed to recognize and solve complex real-world problems with Machine Learning and Deep Learning by leveraging the highly popular Python Machine Learning Eco-system.
Python_Intro_ANU
python notebooks and example data for bioinformatics-bash-python course run for RSB at ANU
r-raster-vector-geospatial
Data Carpentry: Introduction to Geospatial Raster and Vector Data with R
raukr
Jenny Bryan's instruction at RaukR: Advanced R for Bioinformatics Summer School
Ubuntu-Rstudio-server-setup
Here's a bash script that'll get Rstudio server (preview 1.3) setup with Microsoft open R 3.5 under the hood.
VoxelStats
A MATLAB package for multi-modal voxel-wise brain image analysis
VTK
Mirror of Visualization Toolkit repository