Marian L. Schmidt's repositories
RMarkdown_May11_2016
Workshop lesson for "Dynamic documents with RMarkdown and Knitr" that was hosted on May 11th, 2016 through the Data Intensive Biology Training Program.
NGS2015_RMarkdown_Reproducibility
A tutorial on reproducible research using RMarkdown and RStudio
Diversity_Productivity
Microhabitats associate with bacterial biodiversity-ecosystem function relationships
SWC_Genomics
Teaching Notes created for the Data Carpentry's R-Genomics tutorial found at http://tracykteal.github.io/R-genomics/
2017-09-14-gent-cmet
Workshop Website:
angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
Bioinformatics_reproducibility
Workshop on Oct. 12th, 2015 with EEB 416 Class
board
Holds public material generated by and for the SCF board.
datacarpentry.github.io
Website repo
dib-training
Web site for Data Intensive Training at UC Davis
ecology-workshop
Overview of the ecology workshop lessons
Final_PAFL_Trophicstate
Particle-Associated and Free-Living Bacterial Community Composition Across a Productivity Gradient in Stratified Lakes
ggplot2
Into to ggplot for fellow grad students
Heat-Tree
heat tree visualization
mentoring
resources collected by the mentoring subcommittee for instructors
Mothur_oligo_batch
Singular batch analysis by mothur/oligotyping
r-docker-tutorial
A docker tutorial for reproducible research
shell-novice
Software Carpentry introduction to the shell for novices.
website
Software Carpentry website