Martin Rippin's repositories
verktoykasse
Containerized bioinformatic tools
adventure
Code for a textbased Adventuregame
ansible_test_project
Setting up ansible test env
autopore
Suite of CWL workflows for nanopore de novo assembly.
bed_taste
Simple CLI to retrieve bed files for A2G protocol
bioconda-recipes
Conda recipes for the bioconda channel.
biotonne
Dockerfiles and additional files to dockerize specific bioinformatic tools.
BSC_Amplicon
Bash and R scripts used to analyze amplicon data
bwamem_benchmark_kreuzotter
Benchmarking bwamem on slurm cluster
containers
Bioinformatics containers
gene_list_svc
Database service server to get complete gene/region lists for different diagnostics
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
multi-package-containers
Testing building mulled containers for multi-requirement tools.
nerdschool1
Exercises 1/10/2019
PRONTO
rePort geneRator fOr iNpred Tumor bOards
slurm
Slurm: A Highly Scalable Workload Manager
test-datasets
Test data to be used for automated testing with the nf-core pipelines
wgs_a2g_konigskobra
WGS workflow to generate results for the ALL2Gether protocol
wgs_mgi_natter
Snakemake workflow to process sequencing data from MGI Instrument
wgs_somatic_cnv_sv_viper
Workflow to call structural and copy number variants in somatic whole genome data
wgs_somatic_pon
Create panel of normals for different tools
wgs_std_viper
Simple workflow to map WGS data to reference genome according to GATK best practices
wgs_trio_natter
Snakemake workflow to process WGS trio data from MGI instrument
wgs_vcf_anno_db
MongoDB database backend to hold annotated vcf data for data inspection.
wts_fusion_natter
Analysis workflow for RNASeq-data