marouenbg

VFFVA

Dynamically load balanced FVA through a hybrid MPI/OpenMP architecture.

ACHR.cu

A GPU implementation of the sampling algorithm ACHR.

bedtools2

bedtools - the swiss army knife for genome arithmetic

cmapM

Connectivity Map analysis in MATLAB

cobrapy

COBRApy is a package for constraint-based modeling of biological networks

CodeBase

Code depository for papers

covid19-review

A collaborative review of the emerging COVID-19 literature. Join the chat here:

dan

This is an official implementation of Unfolding the Alternating Optimization for Blind Super Resolution

dwbm

FDA-challenge

Code base for the FDA CPTAC challenge

FENRIR

RNA-seq pipeline to detect viral reads

GENRE

IDG-challenge

Code base for the IDG-Dream challenge

marouenbg.github.io

Marouen´s personal website.

math-as-code

a cheat-sheet for mathematical notation in code form

matlab-panda

MATLAB implementation of PANDA & LIONESS algorithms

MONSTER

my-yarn

YARN: Yet Another RNa-seq package

mygene.py

mygene is an easy-to-use Python wrapper to access MyGene.Info services.

netZooC

NetZooC is a package of network methods written in C.

netZooM

NetZooM is a package of network methods written in MATLAB.

netZooPy

NetZooM is a package of network methods written in Python.

netZooR

NetZooR is a package of network methods written in R.

Noise2Same

pandaR

PANDA Algorithm

pypanda

Python implementation of PANDA and LIONESS

rstudio

RStudio is an integrated development environment (IDE) for R

scDream

My attempt for the DREAM single cell transcriptomics challenge

seurat

R toolkit for single cell genomics

yarn

YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization