markziemann

dee2

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

mitch

An R package for multi-dimensional pathway enrichment analysis

5pillars

Five pillars of computational reproducibility

background

Analysis of enrichment background

gmea

Gene Methylation Enrichment Analysis

enrichment_recipe

A recipe for extremely reproducible enrichment analysis

shoulder-instability-osteroarthritis

RNA-seq study of shoulder tissue

asd_meth

analysis of asd methylation data

cryptoblog

collection of code related to analysis of crypto market data

lung_brain

markziemann

rageko

asplenia

Data exploration

bioinformatics_intro_workshop

A four part introduction to bioinformatics using the Linux command line, R and established best practices.

datamanagement

Guides and templates for data management plans

dftd_immune_expression

Analysis of dftd immune expression

dftd_rnaseq

energy

Calculating energy expenditure of compute resources

gabi_10x_multiome

Using 10X Genomics Multi-omics system to understand latent viruses in single cells.

hearps_nkmono

single cell pipeline

maryam_rnaseq

phipseq-shinhae

phipseq1

phyllodes_pathways

pathway analysis of non-malignant vs malignant phyllodes samples

schizophrenia

A pathway analysis of blood based methylation changes in schizophrenia

set7kd

Analysis of set7 knock down RNA-seq data

SurveyEnrichmentMicroRNA

umi_analysis

waheed_ezh2

Some ChIP-seq data analysis

ziemannlab

Ziemann lab website