Mark Ziemann's repositories
docker_for_r_tutorial
How to add a Docker image to your R project to improve reproducibility
background
Analysis of enrichment background
enrichment_recipe
A recipe for extremely reproducible enrichment analysis
shoulder-instability-osteroarthritis
RNA-seq study of shoulder tissue
cryptoblog
collection of code related to analysis of crypto market data
asplenia
Data exploration
bioinformatics_intro_workshop
A four part introduction to bioinformatics using the Linux command line, R and established best practices.
datamanagement
Guides and templates for data management plans
fgsea
Fast Gene Set Enrichment Analysis
gabi_10x_multiome
Using 10X Genomics Multi-omics system to understand latent viruses in single cells.
gmea_app
Shiny app for LAM enrichment analysis of Infinium methylation data
hearps_nkmono
single cell pipeline
phyllodes_pathways
pathway analysis of non-malignant vs malignant phyllodes samples
sc_macrophage
scRNA-seq analysis of macrophages
schizophrenia
A pathway analysis of blood based methylation changes in schizophrenia
waheed_ezh2
Some ChIP-seq data analysis
ziemannlab
Ziemann lab website