markvasin / sartorius-cell-instance-segmentation

sartorius-cell-instance-segmentation

How to run

1. Install dependencies

# install dependencies using conda environment  
cd sartorius-cell-instance-segmentation
conda create --name sartorius python=3.7
conda activate sartorius
pip install -r requirements.txt

2. Download dataset

cd data
kaggle competitions download -c sartorius-cell-instance-segmentation

3. Download detectron2 for local installation (for inference)

kaggle datasets download -d slawekbiel/detectron-05