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Swiss Federal Research Institute WSL

Markus Schlegel's repositories

seq_io

FASTA and FASTQ parsing in Rust

Language:RustMIT68 5 11

thread_io

Rust crate for performing I/O in background thread

Language:RustMIT28 3 1

seqtool

Fast and flexible tool for reading, modifying and writing biological sequences

Language:RustMIT16 2 5

exprtk_rs

Rust bindings to ExprTk (http://www.partow.net/programming/exprtk/)

Language:RustMIT7 3 1

snakecharmer

Amplicon data processing workflows for diversity analysis

Language:PythonMIT200

newspublisher

Revolution version of NewsPublisher snippet

Language:PHP1 30

arduino-wind-logger

Simple low-cost loggers for wind sensors

Language:C++MIT000

bio_scripts

Collection of simple scripts used for metabarcoding and other analyses

Language:PythonUnlicense030

embed_krona

Krona charts in R(Studio)

Language:R03 1

seq_consensus

Alignment consensus in Python

Language:PythonMIT020

buffer-redux

A drop-in replacement for Rust's std::io::BufReader, with extra features

Language:RustApache-2.0000

ngs-sample-tab

Helper script to create sample files for Next-Generation Sequencing (NGS) analysis pipelines

Language:PythonMIT000

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

Language:RustMIT030

rust-bio-types

A library of common biomedical types.

Language:RustMIT020

uvsnake

USEARCH/VSEARCH-based pipeline for amplicon data processing

Language:PythonMIT000