Mark Ivanov's repositories
fast_combinatorial_cv
Fast Combinatorial Cross Validation
astral_brain_reanalysis
Workflow for PXD046417 data reanalysis using DirectMS1/DirectMS1Quant
DeepLC
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
DeMix
DeMix workflow for peptide identification
HUPO_2023_Busan_poster
poster presentation in pdf format
MSACL-intermediate-R-course
Course content for MSACL Data Science 201: Going Further with R
protein_inference_using_DirectMS1
Improving the protein inference from bottom-up proteomic data using protein identifications from MS1 spectra
pyteomics
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
Scavager_JupyterNotebook
JupyterNotebook for the Scavager manuscript
scikit-learn
scikit-learn: machine learning in Python