mariosaenger

bio-re-with-entity-embeddings

Large-scale biomedical relation extraction with entity and pair embeddings

hunflair2-experiments

Code for reproducing the evaluation results from our HunFlair2 paper

datatrove

Freeing data processing from scripting madness by providing a set of platform-agnostic customizable pipeline processing blocks.

motiflets

Motiflets

aeon

A toolkit for machine learning from time series

ActiveAED

This repository contains the code for the paper "ActiveAED: A Human in the Loop Improves Annotation Error Detection". The goal of ActiveAED is to improve the performance of Annotation Error Detection (AED) models by involving a human annotator in the prediction loop.

hunflair-experiments

Source code of the HunFlair experiments

SETH

SNP Extraction Tool for Human Variations

biomedical

Tools for curating biomedical training data for large-scale language modeling

BERN2

BERN2: an advanced neural biomedical namedentity recognition and normalization tool

pedl

Search the biomedical literature for protein interactions and protein associations

bionlp21_summarize

wbi-clef19

Contribution of the WBI-Team to the CLEF eHealth Challenge Task 1

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

SFA

Scalable Time Series Data Analytics

flair

A very simple framework for state-of-the-art Natural Language Processing (NLP)

huner

Named Entity Recognition for biomedical entities