mariogiov

miRNA_processing

Scripts to process miRNA from trimming through annotation.

specfiles

rpm specfiles used for building packages in use at SciLifeLab

cutadapt

cutadapt removes adapter sequences from sequencing reads

basespace-invaders

A collection of tools to work with Illumina's basespace

bcbb

Useful bioinformatics code, primarily in Python and R

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

BestPracticesWorkshop

Repository for the workshop "Best practices on development"

bioluigi

Pipeline framework for biological analyses based on luigi

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

config

Various config files I don't want to re-type

de_novo_scilife

deap

Distributed Evolutionary Algorithms in Python

dotfiles

FRC_align

Computes FRC from SAM/BAM file and not from afg files

genologics

Python interface to the GenoLogics LIMS server via its REST API.

ipython-cluster-helper

Tool to easily start up an IPython cluster on different schedulers.

lic

mario_scripts

modules.sf.net

Adhoc software "packaged" for the ancient and deprecated "module system" (http://modules.sf.net/)

ngi_pipeline

Code driving the production pipeline at SciLifeLab (not yet in production)

ngs.test.data

Test data set generation for ngs

PyConSweden2015

Material for PyCon Sweden 2015 proposal/presentation

radseq

Scripts and wrappers for radtags code to deal with SciLifeLab directory structures.

scilifelab

Misc code snippets for Science For Life Laboratory

spruce_genome_project

Set of tools to assist spurce2.0 project