marinebon / sdg14

Products for Sustainable Development Goal 14 on Life in the Sea

sdg14

Products for Sustainable Development Goal 14 on Life in the Sea from MBON (Marine Biodiversity Observation Network)

Overview

This repository was setup to version and collaborate on code and small data files subsequent to the March 15-17, 2017 meeting in St Petersburg, FL.

We have three ways of sharing files:

1. Google Drive in bit.ly/sdg14mbon: simple, easy notes/presentations/spreadsheets, works well for most

2. Github marinebon/sdg14: versioned scripts, csv’s (small data), etc

3. Server mbon.marine.usf.edu: big data files

Folder Organization

Subfolders are currently organized by teams:

1. biodiversity
2. infographics
3. satellite
4. technical

Large Files on Server

Github limits free, public repositories to 1 GB total with a per file limit of 100 MB (and warning > 50 MB). Any files larger than 50 MB, I strongly recommend storing on our server mbon.marine.usf.edu in the /mbon/data_big folder.

├── data_big
│   ├── biodiversity
│   ├── infographics
│   ├── satellite
│   └── technical
└── sdg14
    ├── biodiversity
    ├── infographics
    ├── satellite
    │   ├── data_small
    │   │   └── climate_indices
    └── technical

Note how the sdg14 Github repo is cloned and available to update (git pull; git commit; git push).

To get an account on the server, please fill out your info on this spreadsheet:

Github & mbon.marine.usf.edu accounts - Google Sheets

For easily transferring files between server and client via SFTP, I recommend CyberDuck for any platform (Windows / Mac / Linux).

Software Setup

For a quick primer on getting setup with Git, Github and RStudio, please see:

marinebon.github.io/help

We will be expanding documentation here in the near future.

mbon server access points

• Rstudio log in
• PostgreSQL studio log in
• shiny apps root dir
  • shiny app test