marieanselmet / Fluo_Ratio_Bact_Bg

Segments bacteria with Omnipose, compute morphological descriptors and fluorescence of bacteria and background

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Computes the fluo of cells over background with time

Returns some additional shape descriptors over time

Dependencies

  • 3DImageSuite Fiji plugin
  • Omnipose conda environment + bact_phase_omnitorch_0 model

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Segments bacteria with Omnipose, compute morphological descriptors and fluorescence of bacteria and background


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Language:Java 100.0%