marianschmidt / msSPChelpR

R helper functions for Second Primary Cancer analyses

http://marianschmidt.github.io/msSPChelpR

marianschmidt/msSPChelpR Issues

New CRAN release
Closed 6 months ago2
Release v0.9.1
Closed 6 months ago1
Roxygen documentation issue
Closed 7 months ago
`pat_status_tt()` fails when dattype = NULL
Closed 7 months ago
new function: create_refrates
Closed a year ago1
New function to calculate IARC histologically different groups
Closed a year ago
Generalize use of `t_site` in `sir_byfutime()`
Closed a year ago1
replace `verb.()` syntax in tidytable functions
Closed a year ago1
[asir] add WHO 2013 standard population
Closed a year ago
[asir] throws error for futime_var = NULL, even if futime_src = "refpop" is used in case of dattype = NULL
Closed a year ago
Deprecate tidytable `verb.()` syntax
Closed a year ago
Update `tidytable::distinct.()` to new selection logic using `pick()`
Closed a year ago1
`calc_refrates()` using numeric versions of `fill_sites` errors due to mismatch of types
Closed a year ago
[calc_refrates] Error in `calc_totals` option creates multiple entries for same strata
Closed 2 years ago
[calc_refrates_tt] Make function more robust for missing `race` information
Closed 2 years ago
Adapt to tidytable 0.8 changes
Closed 2 years ago1
New CRAN Release of `msSPChelpR`
Closed 2 years ago4
Release v0.9
Closed 2 years ago2
[calc_refrates] Attribute "problems_missing_ref_strata" not saved
Closed 2 years ago1
[pat_status] old tidyverse function produces bug on zfkd lung cancer data
Closed 2 years ago
[tests] implement test for sir_ratio
Updated 2 years ago
[CRAN] Update information on theory
Updated 2 years ago
[summarize_sir_results] reshaping into wide format does not fully work when using output = wide and both total row and total fu
Updated 2 years ago
`introduction.Rmd` vignette error blocking `tidytable` v0.8.0
Closed 2 years ago2
[sir_byfutime] add check that there are no dupliates in refrates_df
Closed 2 years ago
[sir_byfutime] fix typo in problems attributes
Closed 2 years ago
Replace tidytable::mutate_across.() as this is deprecated in new tidytable version.
Closed 2 years ago1
Should [sir_byfutime] gain fill_sites argument?
Updated 2 years ago
Check if functions can be made more robust by using .data and .env pronouns
Updated 2 years ago
Make parameter "dattype" optional and set it to NULL
Closed 2 years ago
Replace `tidytable::summarize_across.()` as this is deprecated in new tidytable version.
Closed 3 years ago1
fix issue with writing notes / problems to attributes
Closed 3 years ago
New function to calculate CI for SIR ratios
Closed 3 years ago
CRAN rejecting tidytable v0.5.8 due to msSPChelpR
Closed 4 years ago5
[calc_futime*] implement use_lifedat_min option
Updated 4 years ago
[sir_by_futime] and [summarize_sir_results] Stratification by race and summary gives slightly different results than not stratifying
Updated 4 years ago
[summarize_sir_results] improve calculation of n_base and ref_population_pyar
Updated 4 years ago
[summarize_sir_results] Check whether PYAR is correctly calculated in various scenarios
Closed 4 years ago4
[vignette] finalize vignette
Updated 4 years ago
[summarize_sir_results] function fails for SEER data with inconsistent columns
Closed 4 years ago
[vignette] remove library(tidytable) from vignette after tt 0.5.6 release
Closed 4 years ago
[CRAN] Add examples
Closed 4 years ago
[sample data] create sample dataset for population_us
Closed 4 years ago
[CRAN] Update Package description
Closed 4 years ago
[CRAN] Change Title
Closed 4 years ago
[asir] improve messages/warnings and store as attribute
Updated 4 years ago
[pat_status] give information for how many cases lifedatmin option was applied
Updated 4 years ago
[summarize_sir_results] test option "xbreak_var_name"
Updated 4 years ago
[summarize_sir_results] fix latest errors
Closed 4 years ago
Remove duplicate _tt and _dt versions where speed advantage of a single version is clear
Closed 4 years ago