Marco Ruscone's repositories
Pypath_pipeline
Automatic network construction using omnipath and pypath
cluster_analysis
First part of the code to run PhysiBoSS on cluster and automatically analize the output
perlin_ecm
PhysiCell project when ECM is initialized by a python script into a matlab files and loaded in physicell
project_repo_ecm_simul
Project repository for the creation of jupyter notebook for PhysiCell simulation with extra cellular matrtix
advent_calendar_code_2023
Advent of code calendar for 2023.
PhysiBoSS
PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
PhysiCell-Studio
PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and visualize results. To contribute, fork and make PRs to the development branch.
PhysiCOOL
A generalized, model-agnostic framework for model calibration in PhysiCell.