Dr Marco Claudio De La Pierre's repositories
miniMD
MiniMD Molecular Dynamics Mini-App
toy-amd-rng
Toy repo to test the AMD RNG library
md-dockerfiles
My Dockerfiles
shpc_doc
brief user guide for SHPC, aimed at facility support staff
illumina-nf
Illumina pipeline for DPIRD - uses Nextflow
sc-tutorials
SC Tutorials
singularity-containers
Webinars&Tutorial on Containers on HPC and Cloud with Singularity
maali
Pawsey Supercomputing Centre Build System
containers-astro-python-workshop
Tutorial on Singularity Containers for Python and Radio-Astronomy
wrappie
BETA - A tool for automated deployment of applications using containers, bash wrappers and modules
sc20-tutorial
HPC Container Tutorial at SC20
nanopore-nf
Nanopore pipeline for DPIRD - uses Nextflow
bio-intro-containers
Using Containers in Bioinformatics -- An Introduction
tinker-openmm-plumed
STALLED - NOT WORKING YET -- Tinker interface to an Openmm+Plumed installation
containers-bioinformatics-workshop
Workshop on Singularity Containers for Bioinformatics
CoMD
Classical molecular dynamics proxy application.
sc19-containers
Workshop "Containers for HPC" at SC19 Denver
2D-Laplace-Offload
The main purpose of this tutorial is to present similarities and differences between device offload mechanisms available in OpenACC and OpenMP standards.
biocommons_pathfinder_wp1.4
BioCommons Pathfinder WP 1.4
dpird-mk
Repo for DPIRD's Uptake Project
swarm
Swarm is a script designed to simplify submitting a group of commands to the Biowulf cluster.
nanopore-smk
Nanopore pipeline for DPIRD - uses Snakemake
dummytools
Pieces of code for quick tests
plumed-nest-calcite-1ion
Repository for Plumed input files
uwa-hw
Repo for Hayden Walker's Uptake Project
deepmd-kit_docker
A docker of DeePMD-kit
hello-nextflow
Sample Nextflow pipeline(s)
bio-workshop-18
Pawsey workshop: containers for bioinformatics