Marc Trunjer Kusk Nielsen's repositories
abxaware
R package: Aggregate and plot antibiotic usage data by access, watch, and reserve (AWaRe) groups.
buttonfork
Monitor /r/thebutton.
configs
Config files used to define parameters specific to compute environments at different Institutions
cprr
Functions for working with Danish CPR numbers
DataScienceSpecialization.github.io
http://DataScienceSpecialization.github.io
datasharing
The Leek group guide to data sharing
datatoolbox
For the Data scientist toolbox course on coursera.org
dehumanizer
just a docker file wrapping https://github.com/SamStudio8/dehumanizer
kraken2
The second version of the Kraken taxonomic sequence classification system
marcr
Misc. functions
mikrobiologi
SOPs
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
MultiQC
Main repo at
patogener
Identification, AMR gene detection and plasmid annotation of pathogens. Just a practice project for now
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
roam-css-styles
Visually polished CSS styles for RoamResearch
seq_report_docker
Dockerfile for Sequence report generation
skimr
A frictionless, pipeable approach to dealing with summary statistics
Spoon-Knife
This repo is for demonstration purposes only.
unraid-templates
Templates for unRAID Docker Engine
viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples