marcel-goldschen-ohm

PyQtImageViewer

PyQt image viewer widget with mouse zooming and panning.

EigenLab

C++ utility for parsing/evaluating matrix math equations input at run time in a format similar to MATLAB (requires Eigen for matrix math).

NEU-337-Spring-2020

Programing and Data Analysis for Modern Neuroscience - Spring 2020

NEU-365P-385L-Spring-2021

NEU-365P-385L-Spring-2022

Programming and Data Analysis for Modern Neuroscience, Spring 2022

NEU-365P-385L-Spring-2023

Programming and Data Analysis for Modern Neuroscience

AutoDISC

Single-molecule trajectory idealization using divisive segmentation and clustering (DISC)

NEU-Spring-2019

Programming and Data Analysis for Modern Neuroscience Spring 2019

single-molecule-imaging-toolbox

A collection of MATLAB tools for single-molecule image analysis.

smBEVO

Computer vision approach to intuitive baseline drift estimation for single-molecule data series.

napari-cosmos-ts

napari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS)

plotBig_Matlab

Plot line plots, like time-series data, very quickly in Matlab.

pyqt-ext

Collection of PyQt/PySide widgets/tools.

xarray-graph

PyQt/PySide UI for graphing (x,y) slices of Xarray datasets.

xarray-treeview

PyQt/PySide model/view for tree of Xarray datasets.

zarr-view

PySide or PyQt tree model-view for a Zarr hierarchy

acq4

Data acquisition for patch clamp ephys / optogenetics / imaging experiments

datatree

WIP implementation of a tree-like hierarchical data structure for xarray.

heatmaps

Better heatmaps in Python

INSBootcamp2020

INS Bootcamp 2020

marcel-goldschen-ohm.github.io

Goldschen-Ohm Lab

NEU-365P-385P-Spring-2024

Programming and Data Analysis for Modern Neuroscience

PatchMeister

Electrophysiology patch-clamp time series analysis (NOT acquisition).

pyCLAMP

Time series recordings analysis in Python with UI similar to pCLAMP.

pyDISC

Time series jumps idealization with DISC

pyqtgraph-ext

Collection of PyQtGraph widgets/tools.

PyQtTimeSeriesAnalyzer

Time series analysis UI.

TimeSeriesAnalyzer

Flexible and performant MATLAB viewer and analysis tool for groups of time series.

wikibase-sdk

JS utils functions to query a Wikibase instance and simplify its results

xarray-tree

Tree of Xarray datasets.