marceelrf / WordCloudFromPapers

WordCloudFromPapers

Welcome to WordCloudFromPapers, your go-to solution for effortlessly generating word clouds from sets of academic papers in PDF format. This GitHub repository houses a powerful tool crafted in R, designed to simplify the intricate process of transforming dense research content into visually striking representations.

Steps:

• ETL (Extract, Transform, Load):

  • Seamlessly extract valuable textual data from PDF files.

  • Transform the raw data into a structured format, ready for analysis.

  • Load the processed information for subsequent tokenization.

• Tokenization:

  • Break down the text into individual tokens, capturing the essence of each word.

  • Implement advanced linguistic processing to enhance accuracy.

  • Prepare the groundwork for the final step - creating a meaningful word cloud.

• Plot:

  • Leverage the power of R to create captivating visualizations using the wordcloud2 package (Lang 2023).

  • Craft aesthetically pleasing word clouds that highlight the most prominent terms.

Why WordCloudFromPapers?

Efficiency: Streamline your workflow with a three-step process that takes the complexity out of text analysis.

Flexibility: Tailor your word clouds to meet specific requirements, ensuring meaningful insights.

User-Friendly: Whether you’re a seasoned R user or a beginner, our tool is designed to be accessible to all.

Example

This wordcloud was generate from these papers:

• MicroRNA biogenesis machinery activation and lncRNA and REST overexpression as neuroprotective responses to fight inflammation in the hippocampus (Carvalho et al. 2023);

• Cyclopamine targeting hedgehog modulates nuclear control of the osteoblast activity (Costa Fernandes, Ferreira, and Zambuzzi 2023);

• Development of cobalt (Co)-doped monetites for bone regeneration (Almeida et al. 2023);

• Osteogenic differentiation and reconstruction of mandible defects using a novel resorbable membrane: An in vitro and in vivo experimental study (Bergamo et al. 2023);

• The Multifarious Functions of Leukotrienes in Bone Metabolism (Amadeu de Oliveira et al. 2023);

• Epigenetic Differences Arise in Endothelial Cells Responding to Cobalt–Chromium (C. Fernandes et al. 2023);

• Titanium-Enriched Medium Promotes Environment-Induced Epigenetic Machinery Changes in Human Endothelial Cells (Fernandes et al. 2023);

Example

Contribute

• Join the community and contribute to the enhancement of this tool.

• Report issues, suggest improvements, and collaborate with fellow enthusiasts.

References

Almeida, Gerson Santos de, Marcel Rodrigues Ferreira, Célio Junior da Costa Fernandes, Luísa Camilo Suter, Maria Gabriela Jacheto Carra, Diego Rafael Nespeque Correa, Elidiane Cipriano Rangel, Margarida Juri Saeki, and Willian Fernando Zambuzzi. 2023. “Development of Cobalt (Co)-Doped Monetites for Bone Regeneration.” Journal of Biomedical Materials Research Part B: Applied Biomaterials 112 (1). https://doi.org/10.1002/jbm.b.35319.

Amadeu de Oliveira, Flávia, Cintia K. Tokuhara, Vimal Veeriah, João Paulo Domezi, Mariana R. Santesso, Tania M. Cestari, Talita M. O. Ventura, et al. 2023. “The Multifarious Functions of Leukotrienes in Bone Metabolism.” Journal of Bone and Mineral Research 38 (8): 1135–53. https://doi.org/10.1002/jbmr.4867.

Bergamo, Edmara T. P., Ísis de Fátima Balderrama, Marcel Rodrigues Ferreira, Robert Spielman, Blaire V. Slavin, Andrea Torroni, Nick Tovar, et al. 2023. “Osteogenic Differentiation and Reconstruction of Mandible Defects Using a Novel Resorbable Membrane: An in Vitro and in Vivo Experimental Study.” Journal of Biomedical Materials Research Part B: Applied Biomaterials 111 (11): 1966–78. https://doi.org/10.1002/jbm.b.35299.

C. Fernandes, Célio Junior da, Rodrigo A. Foganholi da Silva, Gerson Santos de Almeida, Marcel Rodrigues Ferreira, Paula Bertin de Morais, Fábio Bezerra, and Willian F. Zambuzzi. 2023. “Epigenetic Differences Arise in Endothelial Cells Responding to CobaltChromium.” Journal of Functional Biomaterials 14 (3): 127. https://doi.org/10.3390/jfb14030127.

Carvalho, Liebert Bernardes, Paula Lemes dos Santos Sanna, Camila Cristina dos Santos Afonso, Eduardo F. Bondan, Geórgia da Silva Feltran, Marcel Rodrigues Ferreira, Alexander Birbrair, Denise Carleto Andia, Alexandra Latini, and Rodrigo A. Foganholi da Silva. 2023. “MicroRNA Biogenesis Machinery Activation and lncRNA and REST Overexpression as Neuroprotective Responses to Fight Inflammation in the Hippocampus.” Journal of Neuroimmunology 382 (September): 578149. https://doi.org/10.1016/j.jneuroim.2023.578149.

Costa Fernandes, Célio J. da, Marcel Rodrigues Ferreira, and Willian Fernando Zambuzzi. 2023. “Cyclopamine Targeting Hedgehog Modulates Nuclear Control of the Osteoblast Activity.” Cells & Development 174 (June): 203836. https://doi.org/10.1016/j.cdev.2023.203836.

Fernandes, Célio Júnior da C., Rodrigo A. Foganholi da Silva, Patrícia F. Wood, Marcel Rodrigues Ferreira, Gerson S. de Almeida, Julia Ferreira de Moraes, Fábio J. Bezerra, and Willian F. Zambuzzi. 2023. “Titanium-Enriched Medium Promotes Environment-Induced Epigenetic Machinery Changes in Human Endothelial Cells.” Journal of Functional Biomaterials 14 (3): 131. https://doi.org/10.3390/jfb14030131.

Lang, Dawei. 2023. “Wordcloud2: Create Word Cloud by htmlWidget.” https://github.com/lchiffon/wordcloud2.