marcalva

hcc_sc_2022

HCC single cell analysis for Alvarez, Benhammou et al.

diem

Clean up single-cell data

AlleleCounter

ambimux

single cell demultiplexing

ambisim

single-cell multiome multiplex and ambient simulator

bisque

An R toolkit for estimation of cell composition from bulk expression data

bulk-rna

Pipeline to process bulk RNA-seq data

DIEM2019

Analysis for DIEM method

dna_scripts

GenomicsLibrary

ggplot_wrappers

ggplot wrapper scripts

go_enr

Calculate gene set enrichments based on gene ontologies

howto

Build recipies and other howtos

MergeVcf2Panel

Merge VCF with a reference panel

rna_var_call

Scripts for variant calling from RNA-seq data

rnaseq_scripts

RNA-seq scripts

sc_quant

Count reads from single-cell data

seurat

R toolkit for single cell genomics

single-cell

Scripts for single-cell analysis