Giters
marbl
/
Winnowmap
Long read / genome alignment software
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Stargazers:
250
Watchers:
14
Issues:
47
Forks:
22
marbl/Winnowmap Issues
Option to preserve MM/ML tags
Updated
a month ago
Sequence information not present in BAM file when mapping quality is 0 for a read
Updated
a month ago
Comments count
1
ERROR: input list of k-mers and winnowmap parameter k are inconsistent
Updated
2 months ago
Comments count
5
No -I option
Updated
4 months ago
Comments count
7
How to map with pre-built indexes ?
Updated
5 months ago
Comments count
2
Seeing multiple primary alignments per read
Updated
7 months ago
Using Meryl on MacOS
Closed
4 years ago
Comments count
9
Segmentation fault
Closed
10 months ago
Detect deletion between gene and pseudogenes
Updated
a year ago
Is there any relevant evaluation for winnowmap2 with RNA-Seq data (like ont, iso-seq)?
Updated
a year ago
Comments count
1
no SQ lines present in the header
Closed
a year ago
Comments count
1
Hard coded OMP threads?
Updated
2 years ago
Comments count
2
Mutilple references
Updated
2 years ago
Comments count
2
how to keep Mm tags in bam
Closed
2 years ago
Comments count
1
required read length for winnowmap
Closed
2 years ago
Comments count
1
Compile issue: error: ‘lrint’ is not a member of ‘std’
Closed
2 years ago
Comments count
5
Optimising gaps in whole genome assembly alignments
Updated
2 years ago
Comments count
2
Try to understand the super long soft/hard clipping in the raw reads mapping
Updated
2 years ago
Not compiling on MacOS ARM
Updated
2 years ago
Comments count
2
Segmentation fault when mapping from index
Closed
3 years ago
Comments count
3
Build of meryl fails (sys/sysctl.h missing in gcc 7.5)
Closed
3 years ago
Comments count
4
failed to parse the FASTA/FASTQ record
Updated
3 years ago
Comments count
3
PacBio CLR reads
Updated
3 years ago
Comments count
1
How to change the mapQ and τ?
Updated
3 years ago
Comments count
1
How to change the mapQ and τ?
Closed
3 years ago
Mapping simulated T2T reads
Closed
3 years ago
Comments count
8
aligning HiFi reads to single pass long reads
Updated
3 years ago
Comments count
2
[trivial] releases seem to be tar's, not tar.gz's
Updated
3 years ago
uniq kmer anchoring mapping
Closed
3 years ago
Comments count
2
Further processing after alignment using Winnowmap
Closed
3 years ago
Comments count
1
Way to filter winnowmap2 BAM files for read lengths
Updated
3 years ago
Finding X scaffolds in a genome assembly
Updated
3 years ago
Winnowmap for read overlapping
Updated
3 years ago
Comments count
2
Multithreading support?
Updated
3 years ago
Comments count
2
Is --split-prefix supported?
Updated
3 years ago
Comments count
2
--secondary=no
Closed
4 years ago
Comments count
5
not compiling on Mac OS
Closed
4 years ago
Comments count
3
Mapping setting advice
Closed
4 years ago
Comments count
4
Much more unmapped reads compared to minimap2
Updated
4 years ago
List of files / multiple files as input
Updated
4 years ago
Comments count
5
Mapping using PacBio CCS BAM file
Updated
4 years ago
Comments count
4
Winnowmappy
Updated
4 years ago
Comments count
1
winnowmap PacBio CCS alignment
Updated
4 years ago
Comments count
4
equivalent of minimap2 -ax splice -uf -k14 ref.fa direct-rna.fq > aln.sam ?
Closed
4 years ago
Comments count
2
kmer size for meryl
Closed
4 years ago
Comments count
2
paftools showing no accurate mappings after Winnowmap?
Closed
4 years ago
Comments count
7
Winnowmap takes much long than Minimap2 - is this expected?
Closed
5 years ago
Comments count
9