mapmeld

vllm

A high-throughput and memory-efficient inference and serving engine for LLMs

text-generation-inference

Large Language Model Text Generation Inference

transformer-debugger

LongLoRA

Code and documents of LongLoRA and LongAlpaca (ICLR 2024 Oral)

natbot

Drive a browser with GPT-3

papers_for_protein_design_using_DL

List of papers about Proteins Design using Deep Learning

Triton-Puzzles

Puzzles for learning Triton

CameraTraps

PyTorch Wildlife: a Collaborative Deep Learning Framework for Conservation.

chronon

Chronon is a data platform for serving for AI/ML applications.

tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

protein_bert

bio_embeddings

Get protein embeddings from protein sequences

continuous-eval

Open-Source Evaluation for GenAI Application Pipelines

abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

GeoChat

[CVPR 2024 🔥] GeoChat, the first grounded Large Vision Language Model for Remote Sensing

amr

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

ProteinGym

Official repository for the ProteinGym benchmarks

loraplus

gpn

Genomic Pre-trained Network

protein-ligand-benchmark

Protein-Ligand Benchmark Dataset for Free Energy Calculations

caduceus

Bi-Directional Equivariant Long-Range DNA Sequence Modeling

geometric-rna-design

gRNAde: Geometric Deep Learning for 3D RNA inverse design

CAMP

predicting peptide-protein interactions

deepblast

Neural Networks for Protein Sequence Alignment

jailbreakbench

An Open Robustness Benchmark for Jailbreaking Language Models [arXiv 2024]

genomic_benchmarks

Benchmarks for classification of genomic sequences

protein-glue

Accompanying code for the ProteinGLUE method

LLM_NeuralExec

Code to generate NeuralExecs (prompt injection for LLMs)

char-mamba

Simple Mamba-based Character-level Language Modeling

PhosBoost