maolopez / human_genome_projects

Manipulating txt, csv files with human genome information.

#human_genome_projects

Manipulating txt, csv files with human genome information.

General description: A CSV file with a Human DNA genoma has 2395592 words. Instead a text file with the Bible book has only 824383 words. The CSV files has 4 columns and 598912 rows. The columns are rsid, chromosome, position and genotype. Percentages are calculated too.

Script	Description	Usage
csv_2_list_count_genotypes.py	calculate the frequency of each genotype	python3 csv_2_list_count_genotypes.py file.csv
csv_2_list_count_chromosomes.py	calculate the frequency of each chromosome	python3 csv_2_list_count_chromosomes.py file.csv
csv_2_list_count_genotypes_by_chromosome.py	the frequency of each chromosome:genotype pair	same logic

Wheel Installation

pip install dist/human_genome_projects-0.1.0-py36-none-any.whl

OR

pip3.6 install --user https://s3.amazonaws.com/human_genome_projects-0.1.0-py36-none-any.whl

Docker Usage

docker run IMAGE_ID