manastech / cafa5

manastech/cafa5 Issues

Missing File 'train_terms.tsv'
Updated 9 months ago
Compare CNN vs RNN classificators for sample terms
Updated a year ago
Create a simple RNN taking sequences and binary classifying one term
Updated a year ago
max_distance argument for get_parents()
Closed a year ago1
Create a simple NN Conv1D taking sequences and binary classifying one term
Updated a year ago
[EPIC] Neural Networks
Updated a year ago
Analysis: get a list of candidate GO terms
Updated a year ago1
Function to get candidate GO terms to be predicted
Closed a year ago2
Function to get one-hot-encoded protein sequence
Closed a year ago
[EPIC] Handle protein sequences
Updated a year ago
Load AlphaFold structure for a protein object
Closed a year ago2
Load PDB structures for a protein object
Closed a year ago
Function to retrieve contact maps from structures
Closed a year ago
Create Structure class able to handle PDBs
Closed a year ago
[EPIC] Handle protein structures
Updated a year ago
Ramp up & learning
Updated a year ago
Function to assess precision/recall for predicted results
Updated a year ago
Function to download protein known GO terms from uniprot
Closed a year ago
[EPIC] Benchmarking & Data Viz
Updated a year ago
[optional] Publish the package on conda repository
Closed a year ago1
Publish the package on pip repository
Updated a year ago
Create a setup.py file for pip
Closed a year ago
Create a dummy predict function
Updated a year ago
[EPIC] Published package with skeleton functionality
Updated a year ago
Package Structure
Closed a year ago