Mamana Mbiyavanga's repositories
1KGP_dimred
Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.
2022-08-01-NiTheCs-Online
Data Carpentry (Genomics) workshop for the National Institute for Theoretical and Computational Sciences
anyvar
[in development] Proof-of-Concept variation translation, validation, and registration service
biosamples-scripts
Scripts for data manipulation in BioSamples
d1.1-beacon-2.x
Beacon v2.x
DataHarmonizer
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 sampling data.
django_website
Python for the Lab website built on Django
email-templates
Free HTML email templates for Mailchimp and other emails services
lift-over-nf
Nextflow pipeline using the ucsc liftOver tool to translate bedfiles from one reference genome to another.
phasing_vcf_eagle
Nextflow pipeline for genotype phasing using Eagle
refimpute_panels
Nextflow pipelines for building H3A refpanels
samtools-head-nf
example nextflow workflow that runs samtools head with samtools version 1.15
specification-v2-default-schemas
Schemas to be used as default by Beacon v2.0
wp1-agm_beacon
Insert WP3 pseudodata into beacon-2.x
wp3
WP3 Getting Started: Start here to explore WP3 material
wrangling-genomics
Data Wrangling and Processing for Genomics