Nirav Malani's repositories
hiAnnotator
Functions for annotating GRanges objects
hiReadsProcessor
Process LM-PCR product libraries
CircosIdeogram
Make Circos style Ideogram plot of point genomic data with few features.
Slim-Extras
Additional resources for the Slim Framework for PHP 5
alleleFrequencyApp
Allele frequency filter app
Language:R000
data_share
Scratch repo for sharing data and examples
GATK4_Best_Practice
GATK4 Best Practice Nextflow Pipeline
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hiAnalyzer
Functions for analyzing and visualizing viral integration site data.
Language:R000
Language:R000
markdown-examples
Markdown examples for for SUAR IT training
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RdataObjects
Misc R data objects to be used for tutorials
Language:CSS000
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language:NextflowMIT000
slidify
Generate reproducible html5 slides from R markdown
Language:R000