malits / bart-tutorials

Suite of tutorials for BART: Berkeley Advanced Reconstruction Toolbox, an open-source library for advanced computational MRI and Image Reconstruction

bart-tutorials

Suite of tutorials for BART: Berkeley Advanced Reconstruction Toolbox, an open-source library for advanced computational MRI and Image Reconstruction

Running Locally

1. These notebooks function best with a handful of jupyter notebook extensions. Run pip install -r requirements.txt to install them. Run startup.sh to configure necessary extensions.

2. Make sure your PATH is configured to find BART. If you get an error when running bart from the command line after installing a release from GitHub, run export PATH=/path/to/bart:$PATH with your respective path to BART. Additionally, you can run apt-get install bart on Ubuntu/Debian or brew install bart on OS X.

Running from Binder

The following Binder allows you to run BART code directly in your browser! Note that anything involving View - the open-source image viewer for BART - does not currently work in Binder.

Webinar Notebook