Malcolm Cook's repositories
JASPAR-UCSC-tracks
Code and data used to create the JASPAR UCSC Genome Browser tracks data hub
Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
chordpro-mode
Emacs mode for editing chordpro files
data.table
R's data.table package extends data.frame:
docopt.R
Command-line interface description language for R (http:docopt.org)
easybuild-easyblocks
Collection of easyblocks that implement support for building and installing software with EasyBuild.
easybuild-easyconfigs
A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
easybuild-framework
EasyBuild is a software installation framework in Python that allows you to install software in a structured and robust way.
easybuild-wiki
EasyBuild documentation wiki
filesystem-reporting-tools
Tools to help system administors manage very large file systems. pwalk
igvShiny
an htmlwidget version of igv, for RStudio and Shiny apps
org-html-themes
How to export Org mode files into awesome HTML in 2 minutes
Quickomics
Quickomics: exploring omics data in an intuitive, interactive and informative manner
R_for_Mass_Spectrometry-docs
R for Mass Spectrometry documentation
ReMapEnrich
ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.
tpp_sandbox
Using The Trans-Proteomic Pipeline (TPP)