maize-genetics

rTASSEL

R front-end for TASSEL

phg_v2

PHG version 2

BioKotlin

rPHG

R front-end for the Practical Haplotype Graph (PHG)

tassel-6-source

bioinformatic_scripts

Bioinformatic Scripts written in Kotlin Script, Python, R, etc. that may use BioKotlin, TASSEL 5, TASSEL 6, PHG, etc. as dependencies

breeder-notebook

A Jupyter Docker Stack for Plant Scientists and Breeders

bwa-mem2

The next version of bwa-mem

rPHG2

R interface to PHGv2

bioconductor_test

biokotlin-tools

Command line tools related to BioKotlin

breeder-genomics-hub

The Breeder Genomics Hub is a batteries-included JupyterHub distribution for breeders (Pangeo for plant scientists)

Field-Book

Field Book

kotlin-compiler-server

Server for executing kotlin code

kotlin-jupyter-libraries

Library descriptors for Kotlin kernel for Jupyter

maize-genetics.github.io

Deployment site for test code

MGJars

R package for distributing jar files for rTASSEL and rPHG methods.

models

Model zoo for genomics

phg-docs

rTASSEL_sandbox

rTASSEL sandbox environment using Binder

commonbean-phg-v2

Scripts and notes for building a common bean PHG using v2 architecture

hubtools

Utility functions designed for R notebooks within the Breeder's Genomics Hub

msaR

The BioJS MSA viewer wrapped into an R package

reelGeneShiny

Shiny App from the hackathon of reelGene scores and other data