KNN for Cell Graph Construction

[sgudaparthi]

I could not find the part in the code where a cell graph is constructed from the histology image (segmented using cGAN). I have two questions in this regard:

1. Could you point me to the code (maybe line numbers) where edge detection using top-K nearest neighbor is performed?
2. Is cGAN part of this code? If not, where should I store the instance mask in the file system after performing nuclei segmentation?

[Richard Chen]

Hi @sgudaparthi, thank you for your interest in our repository.

1. I just added a Jupyter Notebook w/ example data on how graph construction is done.
2. cGAN is not part of the code, but can be found in our other code base at: https://github.com/mahmoodlab/NucleiSegmentation