Mahdi Pourmirzaei's starred repositories
pytorch-lightning
Pretrain, finetune and deploy AI models on multiple GPUs, TPUs with zero code changes.
protein-structure-tokenizer
Official implementation of "Learning the language of protein structures"
ProteinWorkshop
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
llama-models
Utilities intended for use with Llama models.
ttt-lm-pytorch
Official PyTorch implementation of Learning to (Learn at Test Time): RNNs with Expressive Hidden States
schedule_free
Schedule-Free Optimization in PyTorch
alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
magvit2-pytorch
Implementation of MagViT2 Tokenizer in Pytorch
En-transformer
Implementation of E(n)-Transformer, which incorporates attention mechanisms into Welling's E(n)-Equivariant Graph Neural Network
egnn-pytorch
Implementation of E(n)-Equivariant Graph Neural Networks, in Pytorch
equiformer-pytorch
Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding
matmulfreellm
Implementation for MatMul-free LM.
matchem-llm
A public repository collecting links to state of the art QA and evaluation sets for various ML and LLM applications
se3-transformer-public
code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503
se3-transformer-pytorch
Implementation of SE3-Transformers for Equivariant Self-Attention, in Pytorch. This specific repository is geared towards integration with eventual Alphafold2 replication.
Torch-Linguist
Language Modeling with PyTorch