magosil86's repositories
getmstatistic
Quantifying Systematic Heterogeneity in Meta-Analysis
bumblebee
Quantify Disease Transmission Within and Between Population Groups
devtools
Tools to make an R developer's life easier
DMphyClus
A R package for phylogenetic clustering
GaussianMixtureTest.jl
Implement the Kasahara-Shimotsu Test to decide number of components in Gaussian Mixture Model.
GWAMAgetTausquared
A tweaked version of GWAMA that reports the tau_squared heterogeneity statistic
html5-boilerplate
A professional front-end template for building fast, robust, and adaptable web apps or sites.
introtodeeplearning
Lab Materials for MIT 6.S191: Introduction to Deep Learning
magosil86-coding-portfolio
Examples of my work in cpp, java, javascript, stata and R
naive_string_search
A Python implementation of naive string search
PANGEA.HIV.sim
HIV Phylogenetic Simulation Model for the PANGEA-HIV methods comparison exercise.
PANGEAhaircut
Code package to post process IVA contigs before they are used to assemble a de novo reference genome
permutation_testing
A permutation test to assess preferential genetic linkage by geographic distance
phyloscanner
Phylogenetics between and within hosts at once, all along the genome.
Phyloscanner.R.utilities
Utility functions for deep-sequence phylogenetic analyses at the population level with phyloscanner
POPART-IBM
Source code for the PopART individual-based model
python-code-katas
Solving old facebook hackathon questions
R_tuto_for_biostats
R tutorial for beginners, aiming at basic skills in data handling for learners cming from the fields of biology or medicine
r_version_brews
Github repo for homebrew taps of R versions
shiver
Sequences from HIV Easily Reconstructed
tidyr
Easily tidy data with spread and gather functions.
tutorials
Tutorials on phylogenetic and phylogenomic methods