Michael Duprey's repositories
chimerax-docker
Docker image for the molecular visualization program, UCSF ChimeraX
protein-conformation-topology
Persistent homology across protein conformational changes
protein-structure-learning
Protein classification with deep learning and boosted trees using topological features
721-homotopy-type-theory
Course website for Math 721: Homotopy Type Theory, taught at Johns Hopkins in Fall 2021
cats-in-context
Exercise solutions for ch. 1-3 of Emily Riehl's Category Theory in Context
challenge-iclr-2022
GitHub repository for the ICLR Computational Geometry & Topology Challenge 2021
delayexplore
Interactively view delay embeddings in R^3
dynamic-time-warping
Dynamic time warping and calculation of optimal warp path
DeepAb
Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
integral-inner-product
Infix operator for integral inner product and implementation of Gram-Schmidt process
masif
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
PersistenceCurves
A python package for computing Persistence Curves
protein-ebm
Energy-based models for atomic-resolution protein conformations
Ripserer.jl
Flexible and efficient persistent homology computation.