madmolecularman

mrbait

Pipeline for universal design of target-enrichment probes from various sources of genomic data.

BIO_594_2023

grad-caucus.github.io

Website for the Graduate Research and Development Caucus

stacks_workflow

RADseq workflow using STACKS

2023_Eastern_Oyster_Haplotig_Masked_Genome

Repository for Puritz et al. 2022 "A second unveiling: haplotig masking of existing genomic resources improves population-level inference"

datasets

Images and other data from the JUMP Cell Painting Consortium

dDocent

a bash pipeline for RAD sequencing

Larval-Oyster-CASE-RNA

RNASeq Analysis for Multi-Stressor Experiment on Larval Oysters

training-collection

Collection of bioinformatics training materials

BIO_594_2022

Class repo for BIO 594 Spring 2022

laboratory

wet lab protocols including sequencing library preparation

pinskylab_methods

Methods used by many of us in the lab

Lab_Management

how_we_work

Group resources and operating procedures

SCiSM

Symbiont Ciliate Systematics and Metagenomics

BRAKER

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes