A report dashboard constructed with mock linelist data from Applied Epi.
With a csv formatted COVID-19 linelist, this analysis checks the data for errors and constructs the following outputs:
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Rolling graph of cumulative cases and hospitalisations from the last six months
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Summary table of new cases and hospitalisations from the last 7 days
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A plotly map of new cases from the last 7 days with locations
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Demographic tables of cases from the last 6 months broken down by age, gender, race and ethnicity
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A graph of the relative percentages of the most common symptoms in COVID cases from the last 6 months.
This dashboard has been constructed entirely in R and Rmarkdown. The following packages, available on CRAN are required:
- tidyverse
- readxl
- here
- runner
- lubridate
- ggmap
- osmdata
- plotly
- showtext
- gt
- gtsummary
- apyramid
- reactablefmtr