C.MA's repositories
MINTIE
Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
ggsashimi
Command-line tool for the visualization of splicing events across multiple samples
datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
MPscore
a score to predict / cluster meningioma progression
WSHPackage
R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL
gatk4-genome-processing-pipeline
Workflows used for processing whole genome sequence data + germline variant calling.
infercnv
Inferring CNV from Single-Cell RNA-Seq
gatk4-somatic-cnvs
This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
Clinker
Gene Fusion Visualiser
Rtesting
Rtesting
Python-100-Days
Python - 100天从新手到大师
bisulfite_cfDNA
Code presented in "as is" condition that analyzes data and generates figures found in Cheng et al, PNAS
phy_clo_dy
Phylogenetic inference from whole genome sequencing data and modeling of clonal dynamics
cruk-summer-school-2018
Summer school course materials collection
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.